PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G00780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 263aa MW: 29040.6 Da PI: 10.6332 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 178 | 231 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ ONIVA06G00780.2 178 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 231 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.78E-16 | 175 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-29 | 176 | 231 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-24 | 178 | 232 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 179 | 230 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MELFPRQLDL SLHISTPSCF SPSPAAASTT ASSWPWTTKQ QLPEEEEAAA TTSTTTSSRS 60 APPLLLCNSD VFSTRGSSTT NTNHHADGGL ANSQQLKAAA RQPIHGIPVY HGHQQQQRRQ 120 LHHPYDVVGT RQSDGGRRLF SHHVGVGVTP SRTLSSSSSS PARLLPRLPP GRRSVRAPRM 180 RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TIKNTDRPVS 240 NAEYKTERGL RDIYVEVTRS AEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-17 | 179 | 231 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-17 | 179 | 231 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-17 | 179 | 231 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-17 | 179 | 231 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 179 | 231 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656560.1 | 1e-54 | PREDICTED: probable transcription factor KAN2 | ||||
TrEMBL | A0A0E0HJU2 | 0.0 | A0A0E0HJU2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G00780.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17435 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-36 | G2-like family protein |