PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00320.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 481aa    MW: 51216.2 Da    PI: 5.8324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2148e-661274801374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  ONIVA06G00320.1 127 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 210
                      5789*************************976666676655668899999999998665554.........44333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+pf
  ONIVA06G00320.1 211 SPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGIPF 303
                      **********************************************5533.3578889************************************ PP

             GRAS 177 efnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      ef++lv + l++ ++   L+  p+Ea+aV+l     ++         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al++
  ONIVA06G00320.1 304 EFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGTFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALLE 382
                      ********999986515799999**********999997........56789********************966.......5667899***** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W+
  ONIVA06G00320.1 383 SLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQ 469
                      **988.5666999*************998888887......678889*********************************************** PP

             GRAS 364 drpLvsvSaWr 374
                      + +LvsvSaWr
  ONIVA06G00320.1 470 RSELVSVSAWR 480
                      **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.828101460IPR005202Transcription factor GRAS
PfamPF035142.8E-63127480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSSPSTS LGSFSSKPPE DPPPPPIAAD  60
DDCDWDAVVD MHMHMLAPAP APDSSFLRWI MDTGYADADT FPDHPSFDSD LLQLPMPMPS  120
DHPPQPLVDD LLDAARLLDA GDSTSAREIL ARLNHRLPSL PSPPGHAHPP LLRAAALLRD  180
ALLPPTALPV SSTPLDVPLK LAAHKALADA SPTVQFTTFT STQAFLDALG SARRLHLLDF  240
DVGFGAHWPP LMQELAHHWR RAAGPPPNLK VTALVSPGSS HPLELHLTNE SLTRFAAELG  300
IPFEFTALVF DPLSSASPPL GLSAAPDEAV AVHLTAGSGT FSPAPAHLRV VKELRPAVVV  360
CVDHGCERGA LNLLRSCAAL LESLDAAGAS PDVVSKVEQF VLRPRVERLA VGGGDKLPPP  420
LQSMLASAGF AALQVSNAAE AQAECLLRRT ASHGFHVEKR QAALALWWQR SELVSVSAWR  480
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-2620448080375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0E0HJM70.0A0A0E0HJM7_ORYNI; Uncharacterized protein
STRINGONIVA06G00320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-64GRAS family protein