PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 604aa    MW: 67046.5 Da    PI: 6.4084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.5e-48181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ +
  ONIVA06G00080.1  18 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 111
                      79*************************999889***************5347777888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+  g l+g+kktLvf++grap+g +t W+mheyr 
  ONIVA06G00080.1 112 RSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 148
                      **988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-558169IPR003441NAC domain
PROSITE profilePS5100555.13818169IPR003441NAC domain
PfamPF023656.2E-2619147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKQGKVEMTP AVAAAAVLPV GFRFRPTDEE LVRHYLKGKI AGRSHPDLLL IPDVDLSTCE  60
PWDLPAMSVI KSDDPEWFFF APRDRKYPGG HRSNRSTAAG YWKATGKDRL IRSRPAGPLI  120
GIKKTLVFHR GRAPRGLRTA WIMHEYRTTE PHFQSGKNGS FVLYRLFNKH EQDDTHAPAS  180
NLDQQLSTSS QGNPQNGTPA VQPALASIMK DHQTLPSSGF SQLTEIQDAS TSVHDKEQTV  240
AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLDNTDAT CCSSSINAPQ  300
TETSDANLEA RAQSSSMVYS GVAEGSPLCN QDQLHSAFNP HMESQKSGAF CWAGLWTPYP  360
QHWFDTIVEP GRSGMTFSDA LKEQGQEQAP SMKHLTAQDL VDPQQGTAAR RIRLVCSVER  420
ASVSQPVSSH LQSEYEAGSC CNTRNSSNNK KESVRSEDEA GSCCNTGSSS NNHSEENDDA  480
ASQIMDGEPM HIQCKEDTPI QVDHSVEVMD KLQGFSFHEE MLVHANQPRG TNLKQRLLRV  540
ESRNSNENNV PSLETREQQH APHIQKWTSS VVRLGWGWQW TALFVMAGSL LLLVGVWKSL  600
NHTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-421817215171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0E0HJI30.0A0A0E0HJI3_ORYNI; Uncharacterized protein
STRINGORUFI06G00070.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-65NAC transcription factor-like 9