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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA05G30260.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 229aa MW: 24932.8 Da PI: 4.4434 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G30260.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 204 | 226 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ + L++H + H
ONIVA05G30260.1 204 SCKSCSKTFNSEMALQSHSKAkH 226
7*****************98777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MYVKTDDQKL VIGTLSADKF PQIQFDLVFD KEFELSHTSK TANEEEEEKI IPAPRANGKV 60 EGKENEQKKQ GKTDSSASKS KAAVNDDDDD DDSDEDDSED EDLSPEDDDD DSSEDDSSED 120 DEDESDEEET PKKPETGKRK VAEIVLKTPS SDKKAKIATP SGQKTGDKKG VHVATPHPAK 180 QASKTPVNDK SKEKSPKSGG GSISCKSCSK TFNSEMALQS HSKAKHPAK
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Functional Description ? help
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Source |
Description |
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK072845 | 0.0 | AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence. |