PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G30250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24541.1 Da PI: 8.3719 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ + Lr+l P + k+ + a+i A+++Ik+Lq ONIVA05G30250.1 2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50 89************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.74E-12 | 1 | 54 | No hit | No description |
PROSITE profile | PS50888 | 14.958 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 1 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 2 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-11 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK 60 KRRQQPQAHL ISPASISASG GGSPSPTPSP RSLITSCSPT AAAGSSAGSS SSISPKDENK 120 QQLQLVAELA ACCNSPMADV EARISGANVL LRTLSRRAPP VRIIALLESL HLEVLHLNIT 180 TMDDTVLYSF VLKIGLDCHL SVDDLAMEVH QSFMPPPAAH PDHHLHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137000 | 0.0 | AC137000.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0035I01, complete sequence. | |||
GenBank | AC144455 | 0.0 | AC144455.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0086G17, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638702.1 | 1e-164 | transcription factor MUTE | ||||
Swissprot | Q9M8K6 | 2e-69 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A0D3GBP9 | 1e-163 | A0A0D3GBP9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0A3R3 | 1e-163 | A0A0E0A3R3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HJG3 | 1e-163 | A0A0E0HJG3_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1PYL2 | 1e-163 | I1PYL2_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM05G29710.1 | 1e-164 | (Oryza glumipatula) | ||||
STRING | ONIVA05G30250.1 | 1e-164 | (Oryza nivara) | ||||
STRING | ORGLA05G0246000.1 | 1e-164 | (Oryza glaberrima) | ||||
STRING | OBART05G28280.1 | 1e-164 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11144 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 6e-60 | bHLH family protein |