PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G29060.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 273aa    MW: 28985.4 Da    PI: 8.5918
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G29060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-303083358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +vrY+eCl+NhAa++Ggh+vDGCgEfmp +g+   a+alkCaACgCHR+FHR++  
  ONIVA05G29060.1 30 EVRYHECLRNHAAAMGGHVVDGCGEFMPMPGDA--ADALKCAACGCHRSFHRKDDG 83
                     79***************************8876..9*****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.1E-263181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-233181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-263281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2573381IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.05E-5150189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-10151188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGVAYGRTPP SSSSSPAASA SAGNGAGAAE VRYHECLRNH AAAMGGHVVD GCGEFMPMPG  60
DAADALKCAA CGCHRSFHRK DDGQQQQQLR LLIPSPPTPR VPLLMPLPQP QPHPHPHPQH  120
PYLHPPFPYH HTPSGSGGTT TESSSEERGP PSSSAAAAQG RRKRFRTKFT PEQKEQMLAF  180
AERVGFEVDP WRRVGGEQDL QSGGGAVRLS FETHHGGGVA PSPEFAACAA SSCSAASSWC  240
TMTGRAITTA VTSQRRNQSK PPPQLKLDGD LRY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639557.13e-83zinc-finger homeodomain protein 6
SwissprotB8AX537e-87ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0E0HIY60.0A0A0E0HIY6_ORYNI; Uncharacterized protein
STRINGONIVA05G29060.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-19homeobox protein 22