PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G27990.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 630aa    MW: 65747.9 Da    PI: 7.4265
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G27990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30368426259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  ONIVA05G27990.1 368 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 426
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33352428IPR003657WRKY domain
SuperFamilySSF1182901.24E-27360428IPR003657WRKY domain
PROSITE profilePS5081129.987362428IPR003657WRKY domain
SMARTSM007749.7E-37367427IPR003657WRKY domain
PfamPF031061.1E-26369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MESYVGVKRK NVVVGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY  60
QERRVVVGEM DFFKTAEKRG ERKEPPPATA TAAASGHAGA SPDDLSLNKD DLTINMGLLV  120
GRRRNSGSEE SIVDDGGVSS NDEEHREAKA ALAVTKAEIG RLSEENKRLK NMLSNVTTKY  180
NSLQMQFVTL MQQRRSVLAA PIHQQELLDP EKKEQEGSQQ QQQQQLIPRQ FISLGSASLQ  240
PDVEAPHSVV VVGGGGGGDV CAPSSSNPDA AVPAMMPLPH FDHHNHHHPI HGGRERGSSP  300
AEADHHRHRQ QEQPPPPQQQ QLLPPSWLPA DKVPRFLPGK GPEPIPEAAT MRKARVSVRA  360
RSDAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP VRKQVQRCAE DRTVLITTYE  420
GNHNHPLPPA AMAMASTTAA AASMLLSGSM PSADGSLMAG SNFLARAVLP CSSTVATISA  480
SAPFPTVTLD LTQTAPPPPP PASSTQPQPP RPEPAQLQAA LAEAARPVAL PQLFGQKLYD  540
QSKLSAVQAV AGTKGSDGGA LADTVNAATA AIASDPNFTA VLAAALTSYI GSSSGSGGGG  600
GGGSSGTVQP LMSGGGDSCS RDDKIGEQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21358428877Probable WRKY transcription factor 4
2lex_A1e-21358428877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1593603SGSGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0HIK20.0A0A0E0HIK2_ORYNI; Uncharacterized protein
STRINGONIVA05G27990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-70WRKY family protein