PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G25380.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 415aa MW: 42390 Da PI: 6.6305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G25380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	311	351	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L ONIVA05G25380.1 311 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 351 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.259	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	308	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.17E-10	308	356	No hit	No description
SMART	SM00353	2.2E-11	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	311	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY 60 GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD 120 RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT 180 TALPPSKRKL PEKYPVVGTS STTKTTTTSE TAAERRSTKR AAGVSSSITF GGGRHGAGAA 240 AALLGLGRGY EPDTEAIAQV KEMIYRAAAM RPVTLGGAAS ASDPSSAAPP PPQRPRRKNV 300 RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSKMDTATM LDEAASYLKF LKSQLEALET 360 LGNGNGNGNL LHHGYYTGSR NATATAATGS SNSTVLAFGR DGLAGFVKSN RNLQL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT  180
TALPPSKRKL PEKYPVVGTS STTKTTTTSE TAAERRSTKR AAGVSSSITF GGGRHGAGAA  240
AALLGLGRGY EPDTEAIAQV KEMIYRAAAM RPVTLGGAAS ASDPSSAAPP PPQRPRRKNV  300
RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSKMDTATM LDEAASYLKF LKSQLEALET  360
LGNGNGNGNL LHHGYYTGSR NATATAATGS SNSTVLAFGR DGLAGFVKSN RNLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	297	RPRRK
2	311	316	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638480.1	0.0	transcription factor LATE FLOWERING
Swissprot	A0A0P0WQ90	0.0	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0E0HHJ4	0.0	A0A0E0HHJ4_ORYNI; Uncharacterized protein
STRING	ONIVA05G25380.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-27	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]