PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23940.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 461aa    MW: 51492.2 Da    PI: 4.8956
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC80.61.9e-2538139199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie ++df +h +P+ar+kki+ +++   m++ + P++lsk celf+ el++ +w  a++ +r  +   dia+av++t+ +df
  ONIVA05G23940.2  38 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPTFLSKMCELFVQELAVHAWACAQSHNRCIILDMDIAEAVASTESYDF 131
                      68899*7655669********************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  ONIVA05G23940.2 132 LVDILHNH 139
                      ***98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001257.5E-1041123IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.59E-1661137IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-1962136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEKERAWRGR REQQREAMEQ TLDVHRSLRP PMPMAQQQMD EFWRDRQKEI EMTKDFSEHM  60
IPMARLKKIV SSQKGNMMMT FDMPTFLSKM CELFVQELAV HAWACAQSHN RCIILDMDIA  120
EAVASTESYD FLVDILHNHS VKQKSTPCSS TKRCRLVDQP STSHIPHQHL LPQFAPTYTL  180
AIPITPSLMP LISQCTPSSF PSLPQEKFPL MAPTPIVNRS MLFIDNIARG LGLQGNNINA  240
VANNNILDNI VGCSSPAVLA SMMNPALLGP SGPPLNPPNS QSYNYTMDII NSNDACGSNN  300
SSVIVANQAN IAPSGHFYPI ALQSSCSTFL HRNNNDTITA IPEGVDISDI MHVTSDVDAA  360
TKVFSGQEEQ NEKETNVEWH HQNEIYESID IGIINATTRD GNKCSISWDE LGMADDSLLD  420
NFLEELQVRK DDVSDTRIAF NKDPFLDDVV LSNPSTNNGN K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-1648136593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
TrEMBLA0A0E0HH030.0A0A0E0HH03_ORYNI; Uncharacterized protein
STRINGONIVA05G23940.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.28e-24nuclear factor Y, subunit C4