PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23940.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 465aa    MW: 51884.7 Da    PI: 4.9509
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC80.61.9e-2542143199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie ++df +h +P+ar+kki+ +++   m++ + P++lsk celf+ el++ +w  a++ +r  +   dia+av++t+ +df
  ONIVA05G23940.1  42 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPTFLSKMCELFVQELAVHAWACAQSHNRCIILDMDIAEAVASTESYDF 135
                      68899*7655669********************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  ONIVA05G23940.1 136 LVDILHNH 143
                      ***98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001257.8E-1047127IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.63E-1665141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.3E-1966140IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MPYIKKTRCN IIYHSEQQRE AMEQTLDVHR SLRPPMPMAQ QQMDEFWRDR QKEIEMTKDF  60
SEHMIPMARL KKIVSSQKGN MMMTFDMPTF LSKMCELFVQ ELAVHAWACA QSHNRCIILD  120
MDIAEAVAST ESYDFLVDIL HNHSVKQKST PCSSTKRCRL VDQPSTSHIP HQHLLPQFAP  180
TYTLAIPITP SLMPLISQCT PSSFPSLPQE KFPLMAPTPI VNRSMLFIDN IARGLGLQGN  240
NINAVANNNI LDNIVGCSSP AVLASMMNPA LLGPSGPPLN PPNSQSYNYT MDIINSNDAC  300
GSNNSSVIVA NQANIAPSGH FYPIALQSSC STFLHRNNND TITAIPEGVD ISDIMHVTSD  360
VDAATKVFSG QEEQNEKETN VEWHHQNEIY ESIDIGIINA TTRDGNKCSI SWDELGMADD  420
SLLDNFLEEL QVRKDDVSDT RIAFNKDPFL DDVVLSNPST NNGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1652140593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
TrEMBLA0A0E0HH020.0A0A0E0HH02_ORYNI; Uncharacterized protein
STRINGONIVA05G23940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-24nuclear factor Y, subunit C4