PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G22530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 34131.7 Da PI: 6.4491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.4 | 7.9e-06 | 212 | 249 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L ONIVA05G22530.1 212 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 249 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.744 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-12 | 210 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.86E-6 | 210 | 254 | No hit | No description |
SMART | SM00353 | 0.0061 | 211 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-9 | 214 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MADEHEWWNS PCSARTGDDE AACSTADADE SAVGSTPMSF GHGVQPASLS DAAASSSSSS 60 FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASRRLLLGD HAAAPPRHLV 120 VPGAPYGGGG GDDTAAPPRG LSPTPYEAAD NLQQQQSFPG GHHVVSNTDR LHDHHQDAGS 180 PSPATRSSPG SPAAAKKPRI EAPSPMPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH 240 EAIEYIKFLH DQVASLSSPY LRCGRPVQLQ HQQGSHKVNG NCEGKQLDLR SRGLCLVPVA 300 STYTVASETA TEFWHPTFGG TFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 0.0 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638165.1 | 0.0 | transcription factor bHLH68 isoform X2 | ||||
TrEMBL | A0A0E0HGG9 | 0.0 | A0A0E0HGG9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G22530.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 5e-49 | bHLH family protein |