PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21900.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 376aa    MW: 42062.5 Da    PI: 9.507
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21900.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-1094132846
                      HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                      rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  ONIVA05G21900.2  94 RRLAQNREAARKSRLRKKAYVQQLEDSRMKLTQLEQELQ 132
                      9************************99888888776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-586156IPR004827Basic-leucine zipper domain
PfamPF001704.7E-793132IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.87E-793134No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-894136No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.77294133IPR004827Basic-leucine zipper domain
PfamPF141441.6E-30173248IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFVASSPRKC PQGPCQAART ANQLQPGTSG SHRIDSMLGF AAESARRIRS ARHTNFSRLL  60
ISAQAQEFNM VYASPGTDAS TDPDIDKNIR MTLRRLAQNR EAARKSRLRK KAYVQQLEDS  120
RMKLTQLEQE LQRARQQGII ISTSGDQQRS TSENEALAFN MEYMRWLEEH NKQINELRSA  180
VHTHAGDDDL QSIVSNFMAH HEEIFRIKGL AAKADALHVL SATWRTPLER CFLWLGGFRP  240
SDLLKLLADQ LEPLTEQQLA SICNQQQSSQ EAEETLSQGM EIIQDSLAKT VASQLGRAGS  300
SSSSPSNAAD HTAAALGKIG AMESLLQQAD DMRMQSLQKM QRVLTTRQSA RALLLISDYF  360
SRLRALNSLW IARPQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-150CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881449.10.0transcription factor TGAL1-like isoform X1
SwissprotQ6IVC21e-144TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0E0HG880.0A0A0E0HG88_ORYNI; Uncharacterized protein
STRINGONIVA05G21900.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-118bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]