PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G21870.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 388aa MW: 42787.4 Da PI: 10.0131 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 176 | 230 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl ONIVA05G21870.3 176 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 230 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.742 | 173 | 233 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-30 | 174 | 231 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 175 | 230 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-25 | 176 | 231 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-7 | 178 | 229 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.2E-24 | 262 | 308 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPQIPRPPSP 60 LSLALPSPRV AFAGHHRPSP LSPPLLSSRR LLPSLFDPPN SQLGIPPRTA AEAEAAEESI 120 WFPCAARFLV VVAAAGGGSL PRRAGKSTQS NEHMSNIGAF GGSNMGSPAN PAGSGKQRLR 180 WTSDLHNRFV DAIAQLGGPD RATPKGVLTV MGVPGITIYH VKSHLQKYRL AKYIPESPAE 240 GSKDEKKDSS DSLSNTDSAP GMQINEALKM QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ 300 MIIEEQQKLG GSLKACEEQK LPHSPPSLDD YPDSMQPSPK KPKMDNLSPD SVRDVTQSDF 360 ESHLIGPWDQ EAAFRVDEFK ADPGLNKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-21 | 175 | 233 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061987 | 0.0 | AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence. | |||
GenBank | AK069306 | 0.0 | AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 1e-178 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 1e-178 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 1e-178 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 1e-178 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 2e-73 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0HG84 | 0.0 | A0A0E0HG84_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G21870.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-54 | G2-like family protein |