PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21870.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 388aa    MW: 42787.4 Da    PI: 10.0131
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21870.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32176230155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  ONIVA05G21870.3 176 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 230
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.742173233IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-30174231IPR009057Homeodomain-like
SuperFamilySSF466891.97E-16175230IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-25176231IPR006447Myb domain, plants
PfamPF002494.9E-7178229IPR001005SANT/Myb domain
PfamPF143794.2E-24262308IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPQIPRPPSP  60
LSLALPSPRV AFAGHHRPSP LSPPLLSSRR LLPSLFDPPN SQLGIPPRTA AEAEAAEESI  120
WFPCAARFLV VVAAAGGGSL PRRAGKSTQS NEHMSNIGAF GGSNMGSPAN PAGSGKQRLR  180
WTSDLHNRFV DAIAQLGGPD RATPKGVLTV MGVPGITIYH VKSHLQKYRL AKYIPESPAE  240
GSKDEKKDSS DSLSNTDSAP GMQINEALKM QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ  300
MIIEEQQKLG GSLKACEEQK LPHSPPSLDD YPDSMQPSPK KPKMDNLSPD SVRDVTQSDF  360
ESHLIGPWDQ EAAFRVDEFK ADPGLNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-21175233159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.11e-178myb family transcription factor PHL7
RefseqXP_015639153.11e-178myb family transcription factor PHL7
RefseqXP_015639154.11e-178myb family transcription factor PHL7
RefseqXP_015639155.11e-178myb family transcription factor PHL7
SwissprotQ9SJW02e-73PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0HG840.0A0A0E0HG84_ORYNI; Uncharacterized protein
STRINGONIVA05G21870.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-54G2-like family protein