PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G21870.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 430aa MW: 47559 Da PI: 9.8117 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.9 | 1.1e-28 | 212 | 272 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG++ +AtPk +l +m+v+g+t++hvkSHLQkYRl ONIVA05G21870.2 212 KQRLRWTSDLHNRFVDAIAQLGGPDsgyslsRATPKGVLTVMGVPGITIYHVKSHLQKYRL 272 79*********************975555558****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 210 | 273 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-14 | 211 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-21 | 212 | 273 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-6 | 214 | 271 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.9E-24 | 304 | 350 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPQIPRPPSP 60 LSLALPSPRV AFAGHHRPSP LSPPLLSSRR LLPSLFDPPN SQLGIPPRTA AEAEAAEESI 120 WFPCAARFLV VVAAAGGGSL PRRAGKQGIE APVEKLYYST IQLCYILMMY HAKKFSVPFG 180 PQSTQSNEHM SNIGAFGGSN MGSPANPAGS GKQRLRWTSD LHNRFVDAIA QLGGPDSGYS 240 LSRATPKGVL TVMGVPGITI YHVKSHLQKY RLAKYIPESP AEGSKDEKKD SSDSLSNTDS 300 APGMQINEAL KMQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQMIIEEQQK LGGSLKACEE 360 QKLPHSPPSL DDYPDSMQPS PKKPKMDNLS PDSVRDVTQS DFESHLIGPW DQEAAFRVDE 420 FKADPGLNKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-19 | 211 | 275 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061987 | 0.0 | AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence. | |||
GenBank | AK069306 | 0.0 | AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence. | |||
GenBank | CT830069 | 0.0 | CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 0.0 | myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0HG83 | 0.0 | A0A0E0HG83_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G21870.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-51 | G2-like family protein |