PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G21870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 424aa MW: 46964.4 Da PI: 9.8417 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.3e-32 | 212 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl ONIVA05G21870.1 212 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 266 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.742 | 209 | 269 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 210 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-16 | 211 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-25 | 212 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-7 | 214 | 265 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.8E-24 | 298 | 344 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPQIPRPPSP 60 LSLALPSPRV AFAGHHRPSP LSPPLLSSRR LLPSLFDPPN SQLGIPPRTA AEAEAAEESI 120 WFPCAARFLV VVAAAGGGSL PRRAGKQGIE APVEKLYYST IQLCYILMMY HAKKFSVPFG 180 PQSTQSNEHM SNIGAFGGSN MGSPANPAGS GKQRLRWTSD LHNRFVDAIA QLGGPDRATP 240 KGVLTVMGVP GITIYHVKSH LQKYRLAKYI PESPAEGSKD EKKDSSDSLS NTDSAPGMQI 300 NEALKMQMEV QKRLHEQLEV QRQLQLRIEA QGKYLQMIIE EQQKLGGSLK ACEEQKLPHS 360 PPSLDDYPDS MQPSPKKPKM DNLSPDSVRD VTQSDFESHL IGPWDQEAAF RVDEFKADPG 420 LNKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-21 | 211 | 269 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830069 | 0.0 | CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 0.0 | myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0HG82 | 0.0 | A0A0E0HG82_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G21870.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-53 | G2-like family protein |