PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G21630.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 406aa MW: 45555.7 Da PI: 7.1082

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G21630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl ONIVA05G21630.1 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.387	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-22	140	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MYHQHQGRSD LFTTRTSFPM ERHLFLHGGN TQGDSGLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQGQANVGT TKNGVADRIP 120 GTSALAMASA SAIPQAEKTI QIGEALQMQI EVQRQLNEQL EVQRHLQLRI EAQGKYLQAV 180 LEQAQETLGK QNLGPASLED AKIKISELVS QVSNECLSNA VTEIRESSSI HRLEPRQIQF 240 VESSANNCLT AAEGFKEHRL QNHGVLKAYD DSTLFCRKQS QDQESQYSLN RSLSERRMGH 300 LYSGKQYHKS EGSDSDTEVL HEYITPQKNG GGSTTSSTSG SKEINVEKLY LDEPSCKRQT 360 VDYQRESKLL DFDQQSSGKN LDLNTHNIDD NDQGYRHFDL NGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MYHQHQGRSD LFTTRTSFPM ERHLFLHGGN TQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQGQANVGT TKNGVADRIP  120
GTSALAMASA SAIPQAEKTI QIGEALQMQI EVQRQLNEQL EVQRHLQLRI EAQGKYLQAV  180
LEQAQETLGK QNLGPASLED AKIKISELVS QVSNECLSNA VTEIRESSSI HRLEPRQIQF  240
VESSANNCLT AAEGFKEHRL QNHGVLKAYD DSTLFCRKQS QDQESQYSLN RSLSERRMGH  300
LYSGKQYHKS EGSDSDTEVL HEYITPQKNG GGSTTSSTSG SKEINVEKLY LDEPSCKRQT  360
VDYQRESKLL DFDQQSSGKN LDLNTHNIDD NDQGYRHFDL NGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241362	0.0	AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640416.1	0.0	myb-related protein 2 isoform X2
TrEMBL	A0A0E0HG47	0.0	A0A0E0HG47_ORYNI; Uncharacterized protein
STRING	ONIVA05G21630.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-100	myb-related protein 1