PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 320aa    MW: 34140.4 Da    PI: 4.4558
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.4e-26119179259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  ONIVA05G21440.1 119 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSIYVITYFGDHTCS 179
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27114179IPR003657WRKY domain
SuperFamilySSF1182903.66E-25116180IPR003657WRKY domain
SMARTSM007741.1E-39118180IPR003657WRKY domain
PfamPF031062.8E-26119178IPR003657WRKY domain
PROSITE profilePS5081121.058119181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALIATGATA SPASSMASEL MAQGRESAAV LEALLHGASL PPAHGGAHAL AAEILRCCDR  60
ALAALRAGGD AESSSPGTKR SKPATAQPAT RRRRRAAASG GGAAAAAEPA RVEMARTSED  120
GFLWRKYGQK EIKNSKHPRL YYRCSYKDDH GCTATKQVQQ SEEDPSIYVI TYFGDHTCSC  180
QTAAAMDDDD DDENSQHFVI HFGSATASRS GSPPLLYDDD DGDVWRETAA TPPSSRQSRS  240
SPEVDGEESG VKMSKEEPVD SCPVPSAVSS PADVVSCSSP AMEPDLLRCL NWDDDFGDSS  300
FVDADEFMNF DEIDLFQIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21114178468OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-167probable WRKY transcription factor 70
TrEMBLA0A0E0HG160.0A0A0E0HG16_ORYNI; Uncharacterized protein
STRINGONIVA05G21440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.16e-22WRKY DNA-binding protein 62