PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G19180.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 442aa    MW: 49604.9 Da    PI: 6.7414
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G19180.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.6e-12127174448
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 
                       k err+++NReAAr+sR+RKka++++Le+   + +++e+e ++ +++
  ONIVA05G19180.4 127 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 174
                      799*************************97222445555544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-7124191IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381126170IPR004827Basic-leucine zipper domain
PfamPF001704.8E-9127180IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-8128174No hitNo description
SuperFamilySSF579592.69E-7128174No hitNo description
PROSITE patternPS000360131146IPR004827Basic-leucine zipper domain
PfamPF141443.9E-29214288IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MIQSDAYTES AGYLAARPPT LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL  60
VSPASMRSDS GQEQQQQEVL MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK  120
DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQVPTLRK  180
PHKIATSNNT ILTKGAVMFD MEYTRWIDDD SKCMAELQGA LQAQLPDGNL GAIVEECMRH  240
YDELFHLRAV LASSDVFHLM TGMWAAPAER CFLWMAGFRP SEILKMLIPQ LDPLTEQQLM  300
GMCSLQQSSE QTEEALAQGL HQLHQSLADA VGGGPLNDGA DVANYTGLMA LALGRLENLE  360
SFYRQADNLR QETLHHMRRI LTTRQTARCF LSIGEYNRRL RALSSLWASR PRENFIATEN  420
VSPTGTEFQV IQQSQQNQFS GF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639063.20.0transcription factor TGAL5 isoform X7
RefseqXP_015639069.10.0transcription factor TGAL5 isoform X15
RefseqXP_015639070.10.0transcription factor TGAL5 isoform X15
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A0D9ZZW40.0A0A0D9ZZW4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HF740.0A0A0E0HF74_ORYNI; Uncharacterized protein
STRINGOGLUM05G19350.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-126bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]