PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G19100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 263aa MW: 29260.1 Da PI: 6.2938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.6 | 4.3e-35 | 4 | 126 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rF Pt+eelv++yL++k++g + ++e+vi+ +d ++ +++ + w++F++r++++a+g r++r+t sgyWka g+ v ONIVA05G19100.1 4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADAHQ---GA----WTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWV 90 79***********************995444444455544443...33....3457789*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++g+ +g+kkt+vfy+grap g kt+W m+eyr+ ONIVA05G19100.1 91 YSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 126 **********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-42 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.068 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-24 | 5 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADAHQGAWT GDGEPWFYFC 60 PRQEREARGG RPSRTTPSGY WKAAGTPGWV YSSDGRPIGT KKTMVFYRGR APAGAKTKWK 120 MNEYRAFEED DDNAAAAAPA QNHYLQTRSD FSLCRLYTRS GCPRQFDRRP PSSSVAGGGG 180 ENRAAPSSTA AAFANEDAAE SSGKSQKRKR SAPDDRLDST SSSDDNGGCD GSMLQQQQQR 240 QRGTDEELVE CSMTDWADLL DWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-27 | 4 | 159 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 4 | 159 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 0.0 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 0.0 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 1e-161 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-58 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0HF63 | 0.0 | A0A0E0HF63_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PN46 | 0.0 | A0A0E0PN46_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G19350.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA05G19100.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-58 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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