PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G17220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 33830.1 Da PI: 4.6038 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.8 | 2.3e-45 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrFhPtdeelv +yL+++++g ++++ +i++v+iy+++Pw+Lp+++ +e+ewyfF+ rd++y+++ r++r+++sg+Wkatg+dk+v + ONIVA05G17220.1 10 LPTGFRFHPTDEELVINYLQRRATGLSCPI-PIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPVQV 102 699***************************.88***************76667999************************************99 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ v +kk Lvfy gr p +kt+W+mheyrl ONIVA05G17220.1 103 AniQSTPVAMKKALVFYVGRPPMETKTTWIMHEYRL 138 8777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-56 | 3 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.293 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-24 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAMQLSLPVL PTGFRFHPTD EELVINYLQR RATGLSCPIP IIADVEIYNF NPWELPSMAL 60 FGEHEWYFFT LRDHRYPNSV RPSRSAASGF WKATGTDKPV QVANIQSTPV AMKKALVFYV 120 GRPPMETKTT WIMHEYRLTN TGGSTASHPS LSSSTAHPSV KLDEWVLCKI FNKSPEPDNT 180 APPSNVVSRL QCSPPLPPPA APPGNYPPLP VGATNDGGVF AGAGDMLFTI QEHQEGTPSM 240 LPPIPNLEPP AATIGNSSLN GTAAAAAADG HGRLEEEDTS TYTFTDQEME QMLMDLMDQD 300 FFGNDQPQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-58 | 10 | 176 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107330 | 0.0 | AK107330.1 Oryza sativa Japonica Group cDNA clone:002-126-F03, full insert sequence. | |||
GenBank | EU846999 | 0.0 | EU846999.1 Oryza sativa Japonica Group clone KCS021f05 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638459.1 | 0.0 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 4e-68 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0E0HEH6 | 0.0 | A0A0E0HEH6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2Y4P5 | 0.0 | A2Y4P5_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G17220.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16207 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-65 | NAC domain containing protein 25 |