PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G15940.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 620aa    MW: 66473 Da    PI: 5.0202
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G15940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.86.4e-15265318255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                      +r  Wt+  H++Fv+a eqL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  ONIVA05G15940.1 265 TRFTWTTVSHTSFVRAYEQL--KDQEGPKKIKQLMELHGIfvTKTQVSSHLQKYRS 318
                      799*****************..999**************655999**********6 PP
2Response_reg58.44e-20251301107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy  v+  +++eeal+ ++++    ++++++D+ m+gmdG++ll +i+    ++p+i+++  ++  ++ + + 
  ONIVA05G15940.1  25 VLVVDDDAAYLEELKLMLLLAGY-AVTGKTTAEEALKEVDQNPedyFHIVMTDVHMSGMDGFDLLHRING---RVPVIMFSEGEDVVMVMRTVM 114
                      89*********************.***************7777777**********************98...67******************* PP

                      TTESEEEESS--HHHH CS
     Response_reg  92 aGakdflsKpfdpeel 107
                       Ga d+ +Kp+  e++
  ONIVA05G15940.1 115 NGACDYMVKPMTSEAI 130
                      **********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.28E-2621143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.5E-2822144No hitNo description
SMARTSM004481.4E-2123134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.74124138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-1725130IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.05E-1826138No hitNo description
SuperFamilySSF466897.35E-9263322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-14264321IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-10265318IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAENNGSVPP GCKLPAGGFF GRLHVLVVDD DAAYLEELKL MLLLAGYAVT GKTTAEEALK  60
EVDQNPEDYF HIVMTDVHMS GMDGFDLLHR INGRVPVIMF SEGEDVVMVM RTVMNGACDY  120
MVKPMTSEAI KFIWKHVLRW RLSALPANAS SSLQPSDHLA AALAAVAPPP PPAVQLPAAP  180
AQARNRDGEA HEEAELSTQP PALVPSGVQE AAAAVWSSRG DGQEAPPAAV AAAAKAPSKK  240
RGASEVSDRG SNNLEATTGR KKVRTRFTWT TVSHTSFVRA YEQLKDQEGP KKIKQLMELH  300
GIFVTKTQVS SHLQKYRSWL ENERKKEEAT SSSPCNPLSY TNCLDRGYST WKQSSVITEG  360
QQSSSFSGRP IHSMATSNGC LTTTDTQADN YVGVGAKEIE NFISSHQRSL GTAIGQESTI  420
EQASLHSEIT SVSRDAHENG NSQARGSAMS NGTSGTRGVL VTNENLLHVV SASLPSNMGQ  480
PTQPSQSFYT NELAANYSII SDQNPGTSHP ISSSAINNQN SKTQEMSVSQ TVELGCGNDV  540
MLDWPELVGL EDQLDNDVLM NSFFDGDLLQ QGVVTAIDGT QEMLAFDSTG DLGSVPPRGL  600
NNEIASHENT NGKNGASSGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427220.0AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0E0HE080.0A0A0E0HE08_ORYNI; Uncharacterized protein
STRINGONIVA05G15940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-19response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]