PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G14980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 601aa    MW: 61191.5 Da    PI: 5.4972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G14980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS233.11.2e-7117755634374
             GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQW 125
                      +g+++qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    QW
  ONIVA05G14980.1 177 EGRSLQRLASAFAEALALRFILPCDGVCRSLHLTRAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErAVVHVVDLGSGvDANQW 268
                      6899***************************8888875..6677789999**************************5556******973689** PP

             GRAS 126 paLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlqlh 211
                      + L +  a+Rp+gpp  lR+T+v++    s++ l++++   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq+h
  ONIVA05G14980.1 269 VELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAVAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGHPLAVVANLQIH 357
                      ***********999989********....9**************************5.66666662222222235678888************* PP

             GRAS 212 rll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres. 279
                      rll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd+l +++ p+++ 
  ONIVA05G14980.1 358 RLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDALeASSTPPAAv 451
                      ***********************99764455555589***********************************************5555666668 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg......yrveeesgslv.lgWk 363
                        +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++  l  ++v+ + g       r  +  g++  ++W 
  ONIVA05G14980.1 452 ppHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALASTETLAQQMVAaGGGgagagvLRAAHGGGCFPvICWC 545
                      99*************************************************988877776666666663333455544444455777757**** PP

             GRAS 364 drpLvsvSaWr 374
                      d p++svS W+
  ONIVA05G14980.1 546 DVPVFSVSTWT 556
                      **********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.127109528IPR005202Transcription factor GRAS
PfamPF035144.2E-69177556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAAEVPRLAL GGGGGGGERL PVPPMAAAEE DSPAATSTRK RLVGTSGNLT MAAEIPRLAL  60
GGGGGGAGGE RLPAAGEDSA PAATDAGKRP VVGLGFGSSL AAMAAAAAAG IQPDAFALGG  120
PAEYPAGDGE RDVLMVSFLR SIAAFLADGT CQMQVNDGLS CVVDLAGGDA DGGGVGEGRS  180
LQRLASAFAE ALALRFILPC DGVCRSLHLT RAPPPPAVSA ARQGFRAMCP FVRLAAAAAN  240
LSIAEVMEAE RAVVHVVDLG SGVDANQWVE LVRLVAARPG GPPGLLRLTV VNESEDFLSA  300
VAAYVAAEAQ RLDLSLQFHP VLSSIEELSA TATGSIGSRL VVIPGHPLAV VANLQIHRLL  360
AFPDYVDGVA SRRPAAEQSG SSQHTMTTAT KTKADALLRA IRDLNPKLVV LTENEADHNV  420
AELGARVWNA LNYYAALFDA LEASSTPPAA VPPHERACVE RWVLGEEIKD IVVREGTGRR  480
ERHETLGRWA ERMVAAGFSP VTAARALAST ETLAQQMVAA GGGGAGAGVL RAAHGGGCFP  540
VICWCDVPVF SVSTWTARRV LVPAPPLWPP AAAGGAGPSG SGYGGNGPST ASSSAAMWWV  600
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2517855853381Protein SCARECROW
5b3h_A1e-2517855852380Protein SCARECROW
5b3h_D1e-2517855852380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA0A0E0HDP50.0A0A0E0HDP5_ORYNI; Uncharacterized protein
STRINGONIVA05G14980.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-39scarecrow-like 3