PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G14200.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 476aa    MW: 53150.2 Da    PI: 4.4037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G14200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.32.3e-30331651128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatg 87 
                      l pG++F P+deelv++yL+ k+e+++ ++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ +++ +++++nr+     +++g W+atg
  ONIVA05G14200.1  33 LSPGYHFVPSDEELVDFYLRGKIEQRRPPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATG 125
                      579************************999.99**************8555554888*****9988766615779999656666679******* PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++ k +++++g+k++L++   +a+++e+ +W mhey +
  ONIVA05G14200.1 126 SVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                      ******99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3325173IPR003441NAC domain
PROSITE profilePS5100532.41633195IPR003441NAC domain
PfamPF023654.2E-1835164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MTAESNGGNS SAAATTASNG GRRRHELVPK LRLSPGYHFV PSDEELVDFY LRGKIEQRRP  60
PMDFINEVDI MSFDPVKLIE KYKGYGENRW YFFTVRKPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ LKQTYEAEKK  180
AQEEEERGVK RKRTATRKRR KGDIDQTTSQ EQEDQQQETP PPGDPHDQSV VDAPYYSTQM  240
ALGGEEEVAP VPWCADCMAQ PDRIEYPAVW YNQQEQQPSQ LVDRSMMTQG YIGDLYYIQN  300
QFDQQQAHDH GSINAFDEAL DQCHDTNLAW DNAGIYPGNN LLDGNLDDDT QDQFGNQATL  360
GALTGELEYG TGYQFHDALQ ATPGSDDASA QSMGIQPAAG HSMGDDDETC CNDDLSSLLA  420
DISRILLDGN GVINNEGNPE GSNQGLHICK DGHQWPLEES TMPTVECVLQ HPGESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-16201652140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HDE30.0A0A0E0HDE3_ORYNI; Uncharacterized protein
STRINGONIVA05G14200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-20NAC domain containing protein 94