PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G13280.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 628aa    MW: 68651.6 Da    PI: 8.724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G13280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.9e-101282278
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
                      pG + +P+d+elv  yL ++++g++l+l     e+d +++ P++L +  +++ +e +f ++++ k+a+gkr++ ++
  ONIVA05G13280.1 12 LPGPKLDPSDDELVGGYLLRRLQGQPLPL-----EADPLSARPRNLAAD-HGRGDEAFFLAEAQAKNAKGKRQRSTV 82
                     7999**********************999.....79**********844.456679999999999999999887644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-10484IPR003441NAC domain
SuperFamilySSF530981.39E-12223351IPR012337Ribonuclease H-like domain
CDDcd062221.97E-23227348No hitNo description
PROSITE profilePS508799.963227352IPR002156Ribonuclease H domain
PfamPF134565.8E-33228350No hitNo description
Gene3DG3DSA:3.30.420.104.7E-5229351IPR012337Ribonuclease H-like domain
SuperFamilySSF530981.64E-13463593IPR012337Ribonuclease H-like domain
PROSITE profilePS5087910.835467592IPR002156Ribonuclease H domain
CDDcd062224.98E-27467588No hitNo description
PfamPF134563.0E-36468590No hitNo description
Gene3DG3DSA:3.30.420.105.7E-5469593IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAAAAAGADG LLPGPKLDPS DDELVGGYLL RRLQGQPLPL EADPLSARPR NLAADHGRGD  60
EAFFLAEAQA KNAKGKRQRS TVEGQSMCVD GGRLRVPDDG RGGGGLAFSH FLPLSPSIVP  120
SPAPSPRCST STPLSPPKLL ADHGRGDEAA FFADAWAKNG KRQKQRSTRL RVADDGGGGS  180
AFLPPSILPS LLPAPRCSTP LSPTSPPFRP SRVIVRWARP PPGWCKLNFD GSVFNDGSRR  240
ASIGGVIRDS DAGVVLAFAE TTEHWTVGVV EARAMIRGLR FALACFIERL EVEGDDLVLV  300
KLIRGEETET RIPAAMQAEI LNLLRCFAEV DVRHIYREGN SVAHTLCRQA YVCPGIWSQR  360
GGGMPAAVWD KVDDDRRGVV HERIRKNNGS VLGAVQTQRG VAKRFAQTDT VAHSKTGTGS  420
ALEQILVVSC WFYHQWCHYS SIEMKLEMNK VMRQWKWAPP PVGWCKLNFD GSVFNDGSRR  480
ASIGGVIRGC DGGVVLAFAE TTEHLTVGVV EARALIKGLK LALKCFVERI VVEGDDLVLV  540
QLLRGEETQT RIPAAMHDEI LSLLRRFTEF EVRHIYREGN SVAHTLCRQA YQGPGLWTER  600
VPMPGAVREK IDEDCRGVLH ERLCKKNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378KGKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.11e-114uncharacterized protein LOC112939071
TrEMBLA0A0E0HD250.0A0A0E0HD25_ORYNI; Uncharacterized protein
STRINGONIVA05G13280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713