PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G11240.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 327aa MW: 36700.2 Da PI: 4.9958

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G11240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	74.7	1.3e-23	31	128	2	96
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ++ fw + ie +t ++h lP+ +k+++++ +d m+sa++P++++k celf+ eltlr+w+ a++ +r + +dia+a+t t+ + fl ONIVA05G11240.1 31 MEEFWRRSqeqIEASTGNHEHILPIDCVKNVIRQKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFL 124 778997542338888899999************************************************************************* PP NF-YC 93 vdiv 96 ++ ONIVA05G11240.1 125 GNVL 128 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.44E-16	10	124	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-18	53	128	IPR009072	Histone-fold
Pfam	PF00808	3.5E-9	53	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAIPTKEEVE HNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASTGNHE HILPIDCVKN 60 VIRQKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES 120 YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP 180 PIGQMGTQHT LSPFAFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS 240 DAAIVVQQGE TTHPFSSQNA CPFLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS 300 QDVAEEDMSN ESLEGSQKDE DLFLHEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-13	40	128	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639189.1	0.0	uncharacterized protein LOC4338359
TrEMBL	A0A0E0HCA0	0.0	A0A0E0HCA0_ORYNI; Uncharacterized protein
STRING	ONIVA05G11240.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-19	nuclear factor Y, subunit C2