PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G07450.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 435aa    MW: 45865.2 Da    PI: 6.8976
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G07450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-0698136537
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       C+ +e  e++  C  ++  lC+ C   +H        H
  ONIVA05G07450.1  98 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 136
                      7******99*********************544555555 PP
2zf-B_box30.86.2e-10162202337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  ONIVA05G07450.1 162 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 202
                      789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.19694141IPR000315B-box-type zinc finger
SMARTSM003366.3E-1094141IPR000315B-box-type zinc finger
CDDcd000213.47E-598129No hitNo description
SuperFamilySSF578458.7E-5157200No hitNo description
SMARTSM003361.4E-15160207IPR000315B-box-type zinc finger
PfamPF006431.7E-8162194IPR000315B-box-type zinc finger
CDDcd000211.41E-9164207No hitNo description
PROSITE profilePS501199.542165207IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVGSAFEFAI LRRISPQKKK QFVRPLGVET SANGSRRRRP TSTAPTNPFH SILHRPPPMS  60
PPPPPYYHHL LLLRSSPTTT GGGARVLAAA ELARMKLLCS ACEAAEASVL CCADEAALCA  120
RCDRDIHAAN RLAGKHLRLP LLSPASSSSS SAAALAPPPP SPPKCDICQE SHAYFFCLED  180
RALLCRSCDV AVHTANAFVS AHRRFLLTGV QVGQEQDEHS PDPPEPSPPP PPPPPASKSD  240
HPAPLYGEGG GGFSWDAADS PAAGGLPDWS AVDDQFGSPP PPRHTDTATV TTPPPTKRSP  300
RAPAFGGQGG MMDWPLGEFF GGFTDFTGGF GFGFGDSGTS KADSGKLGGS TDGSPYYRSS  360
SEDDRNADEL FGQVPEIQWS VPELPSPPTA SGLHWQRHPA ATHGGGGGPD TTAFVPDICS  420
PDSCFPATTS KRRRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11738KKKQFVRPLGVETSANGSRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.10.0B-box zinc finger protein 22
TrEMBLA0A0E0HAY00.0A0A0E0HAY0_ORYNI; Uncharacterized protein
STRINGONIVA05G07450.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-42light-regulated zinc finger protein 1