PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G07120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 356aa    MW: 38059.6 Da    PI: 9.9264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G07120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12163207554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  ONIVA05G07120.1 163 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 207
                      7789*********************9.....9**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-10160208No hitNo description
SuperFamilySSF474594.06E-16160226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEHDHQYAT PPSPSSSSFR SFSAGTTTTT SRDDNSSLML AAATAAASCH HQTEVSSQIL  60
LPRPGQAARR SSGGHGAATA FRPYSRYLGP KKHLLRRPGA ATTTTTGGGG GQRAFKKAIS  120
VLSKIHAARL AQYYQIMEMA ARASPAATGG GGGGENQPLQ LQHVLSERKR REKLNDSFKA  180
LRDVLPPATK KDKASVLMRA KDYVNVLKGR IAELEEKNRK LSESQQLHAG DGDGGERDDR  240
PDDDKIEVNM SRSPADHDSK CQELHLKIVL GSSSGCSAMD AVAGILQGLN EKRDVSLLAT  300
GHNSSSSGRR RLLPRAKSSQ QPASSSCDEE ILKESVVKDD SPAAVKDVMQ SVTLHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERKRRE
2167172RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.11e-172transcription factor PIF1
TrEMBLA0A0E0HAU00.0A0A0E0HAU0_ORYNI; Uncharacterized protein
STRINGONIVA05G07120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-18bHLH family protein