PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G06750.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1086aa    MW: 117639 Da    PI: 8.8048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G06750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-347879411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+         
  ONIVA05G06750.1 787 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqpdd 878
                      699************.99******9987777664443344777756**********.555666799******************88******** PP

              NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 +++ +W++tgk++e+++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ONIVA05G06750.1 879 hpqaskgrnvaAAETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 941
                      ********99877899************.999***********55589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0144690.22872405No hitNo description
SuperFamilySSF530671.49E-3373372No hitNo description
Gene3DG3DSA:3.30.420.404.0E-3673225No hitNo description
PRINTSPR007898.7E-387588IPR017861Kae1/TsaD family
TIGRFAMsTIGR003292.3E-8175371IPR017861Kae1/TsaD family
PfamPF008142.2E-8996372IPR000905Gcp-like domain
PRINTSPR007898.7E-38145165IPR017861Kae1/TsaD family
PROSITE patternPS010160165185IPR017860Peptidase M22, conserved site
PRINTSPR007898.7E-38166185IPR017861Kae1/TsaD family
PRINTSPR007898.7E-38198210IPR017861Kae1/TsaD family
PRINTSPR007898.7E-38220241IPR017861Kae1/TsaD family
PRINTSPR007898.7E-38328337IPR017861Kae1/TsaD family
PfamPF035471.5E-11463563IPR004776Membrane transport protein
SuperFamilySSF1019412.75E-34779960IPR003441NAC domain
PROSITE profilePS5100530.921787960IPR003441NAC domain
PfamPF023651.9E-15788941IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MGYWADNILG FFLGREYFGL KGPIVLRFGP LLLTLVSSHL SCPLTSLQNP TVAAAPAAMT  60
SSPAARRRPP GPLALGLESS ANKIGIGVVS LSGEILSNPR HTYVTPPGHG FLPRETAHHH  120
LAHLLPLLRA ALGEAGVTPA DLACVCYTKG PGMGAPLQVA AAAARALSLL WGKPLVGVNH  180
CVAHVEMGRA VTGAVDPVVL YVSGGNTQVI AYSEGRYRIF GETIDIAVGN CLDRFARVLE  240
LSNDPSPGYN IEQLAKKGEK FIDLPYVVKG MDVSFSGILS FIEATAIEKL KNNECTPADL  300
CYSLQETLFA MLVEITERAM AHCDSKDVLI VGGVGCNERL QEMMRIMCSE RGGRLFATDD  360
RYCIDNGAMI AYTGLLAYAH GMTTPLEEST FTQRFRTDEV HAIWREKEMP VLTNIRAHAM  420
AEVSKDEASV PTPIAVILVL FLPIQGNRIL GKEARVQRHV TTIISEQFPP DVDASIATFR  480
VDSDVVSLNG REALQADAEA GRDGRVHAVI RCSASTSTTG GGAARSGVSR AYGASNAMTP  540
RASNLTGVEI YSLAEMKWKE RSGTAKTAKM AKRRGGWEND ATRMAAGEQE RQASQVLGEG  600
ARRHPGLDPD LRLRGSEDVV QEDCRRRRRH RRDARSSGLP RLAATAKPTS SPPPRASAGC  660
ACGSSSAAAV ARRSSSSAST ERRRTPPPCS SLASTERRLT PPPCSPRRPP PPPCSSSHEI  720
ALNENHFGHV GMYGSIQARM SSDGASGSIG MKHDDGDHRP ITGASSRRCP SCGHDPDCNK  780
PFDMVGMPAG VRFDPTDQEL IEHLEAKVKD GGSTSHPLID EFIHTIQGED GICYTHPENL  840
PGVTRDGLSK HFFHRSAKAY PTGTRKRRKV LADQQPDDHP QASKGRNVAA AETRWHKTGK  900
TREITVRGQP KGCKKILVLY TSFGKKRKAE KTSWVMHQYH LGELDDEKEG ELILSKVFYQ  960
TQTRSAAAAE APVSSGAAME VQGQQQQVLK LQADDGHFSS APTKKRLHQD VVAQVKVDRG  1020
HHCMPAQRQV KFNLKVTPVP TTSSFPVVID KQLEELQFIS PKRQIGLTSA GLLTTKINMD  1080
NFLDSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gwj_K1e-167724062335Probable tRNA N6-adenosine threonylcarbamoyltransferase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1624631RRRRRHRR
2625632RRRRHRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024870.0AK102487.1 Oryza sativa Japonica Group cDNA clone:J033094M21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HAQ10.0A0A0E0HAQ1_ORYNI; Probable tRNA N6-adenosine threonylcarbamoyltransferase
STRINGONIVA05G06750.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-78NAC domain containing protein 75