PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G04920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 21698.8 Da PI: 8.8075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 2e-40 | 28 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael ONIVA05G04920.1 28 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 121 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ ONIVA05G04920.1 122 AAVRAD 127 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.227 | 27 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-40 | 28 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMARRSCSMP AAGAGPGSAA AAVNTITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFASV 60 HKVFGASNVS KMLLEVHESQ RGDAANSLVY EANLRLRDPV YGCMGAILTL QQQVQALEAE 120 LAAVRADIVR HKYRLPSAAA VLPSSHASHL LAAAAAARQL PVAGTMGVVT TATLPASASS 180 SSTTAVYAAA SSSTDYSSIT NENVPYFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 28 | 131 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 28 | 131 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134341 | 0.0 | AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881485.1 | 1e-150 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q9AT61 | 6e-67 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | C7J2W5 | 1e-148 | C7J2W5_ORYSJ; Os05g0165450 protein | ||||
STRING | ORUFI05G04770.1 | 1e-149 | (Oryza rufipogon) | ||||
STRING | OS05T0165450-00 | 1e-148 | (Oryza sativa) | ||||
STRING | ONIVA05G04920.1 | 1e-149 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-58 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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