PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G03610.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 414aa    MW: 46064.4 Da    PI: 7.8944
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G03610.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR216.7e-0744671741
              TCR 17 YCeCfaagkkCseeCkCedCkNkee 41
                     YCeCfaa+++C+  C+C+ C Nk e
  ONIVA05G03610.4 44 YCECFAARVYCDG-CHCSPCGNKIE 67
                     *************.********976 PP
2TCR50.83.3e-16113152140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  ONIVA05G03610.4 113 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 152
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.07434153IPR005172CRC domain
SMARTSM011140.224468IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.6E-54465IPR005172CRC domain
SMARTSM011147.6E-18113154IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-12116151IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPPVRSAPVA PPPPPQQKKP AVPVSRPWPM SFTPHPPPPP PPPYCECFAA RVYCDGCHCS  60
PCGNKIENEN IRKEAIETIL LRNPLAFQPK IENSPNTVTV RKDNSEAIPP IPKHNKGCHC  120
RKSECLKKYC ECFQANILCS KNCRCQDCKN FEGSEERKAL VQMKNASDRN HIQEAANFAL  180
NGATTGSLGY KSSPVRRKKY QENSLGEQIL SEAQFQPLAS SCTGFGGDIA INYQSKSSEM  240
IYRSPLANTI PLIEVNDLVK NALVACRKAP EAFLTKAGNK VEMQAEKQYQ TNDEINNDKT  300
KEQNLKEASL KDIQNKACID RQNINGTEPH LANSFKDSRP ASPGTQALMC DEMDTTFGNE  360
DYRSPFVVPS RDQDISELNA DQERIVLTGL RDYLRVLITR GNINGECNLL TLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-204416325133Protein lin-54 homolog
5fd3_B5e-204416325133Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047710.0AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0E0H9K00.0A0A0E0H9K0_ORYNI; Uncharacterized protein
STRINGORUFI02G12070.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-69Tesmin/TSO1-like CXC domain-containing protein