PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G02540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 507aa    MW: 53257.6 Da    PI: 6.1626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G02540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16341387455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  ONIVA05G02540.1 341 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 387
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.55E-18333391No hitNo description
Gene3DG3DSA:4.10.280.106.2E-21334395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-21334399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-14341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
GAANHHHHDD DDDDDDDDVP WLHYHPVVDD DDDADADTAP LPPDYCAALL SGLSDHLPPP  120
AAAASRVDPD PCSSSHGAVV PSTSAAAAKQ ARTSGGGGGG VMNFTFFSRP LQQRPSGGET  180
ASASASAAAT STVPVESTVV QAATNRLRST PLFSDQRMAW LHPPKPSPRA AAPPPPPPPL  240
APTTRHRLDT ATATATVAQR LPPSEAKAPD APPPAATATA TTSSVCSGNG DRRQLNWRDS  300
HNNQSAEWSA SQDELDLDDE LAGVHRRSAA RSSKRSRTAE VHNLSERRRR DRINEKMRAL  360
QELIPNCNKI DKASMLEEAI EYLKTLQLQV QMMSMGTGMF VPPMMLPAAA AAMQHHHMQM  420
QQMAGPMAAA AHFPHLGAAA AMGLAGFGMP AAAQFPCPMF PAAPPMSMFA PPPPPPPFPH  480
AAATAIEQTP SPPGAADAGN APAVKQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879580.0AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638282.10.0transcription factor APG isoform X2
SwissprotQ6AT900.0APG_ORYSJ; Transcription factor APG
TrEMBLA0A0E0H9460.0A0A0E0H946_ORYNI; Uncharacterized protein
STRINGONIVA05G02540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]