PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G02430.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 502aa    MW: 52252.3 Da    PI: 7.3339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G02430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30249307259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+H h+
  ONIVA05G02430.1 249 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDKSILITTYEGTHSHP 307
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33233309IPR003657WRKY domain
SuperFamilySSF1182901.83E-27241309IPR003657WRKY domain
PROSITE profilePS5081128.185243309IPR003657WRKY domain
SMARTSM007744.3E-35248308IPR003657WRKY domain
PfamPF031061.7E-26250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM  60
VSTALDLLTA VNDGDHHEEK KGQSNIHQSK QMDAAATTVE GELRQAGEEN RRLRRRLEEL  120
TSSYGALYHQ LVQAQQLHTK HQQQAPIAGV QLLDALAAAS PASHRRRAAA AVDGDRTADS  180
DGGEGDENVS PSLGSKRPAA AATLTRLTPE SGSGGENNGG GEQAPAAEMA PCRKARVSVR  240
ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMASQC PVRKQVQRCA EDKSILITTY  300
EGTHSHPLPP AAAAMAKTTS AAAAMLLSGP AVSRDALFAA HHHVVAPPPF FHHPYAGSTM  360
ATLSASAPFP TITLDLTQPP TTTTTTAAAA MLQLHRPHAF SSLPFSMYGA GGGSHRPPVV  420
LPPPSSVVET MTAAITRDPN FTTAVAAALS SIMAGGGAQA RTPPRGGSDA AGDINGGGGA  480
DHATAGARAA AAATQPCGTS PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-21239309877Probable WRKY transcription factor 4
2ayd_A6e-21235311176WRKY transcription factor 1
2lex_A8e-21239309877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638124.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0E0H9340.0A0A0E0H934_ORYNI; Uncharacterized protein
STRINGONIVA05G02430.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-50WRKY family protein