PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G00200.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 476aa    MW: 51637.3 Da    PI: 7.3262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G00200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09327374455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  ONIVA05G00200.1 327 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 374
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057532.0E-5215170No hitNo description
CDDcd000838.10E-11321378No hitNo description
SuperFamilySSF474593.93E-17321393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17323394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6327374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAQQWRSLLF LLLLLLLVPF AAAAGQDAPF VVAQKKVALS RPGPGVERLA VTLNLYNQGS  60
ATAYDVSLND DSWPQEAFQL ISGTTSKIVE KLDPGATASH NFILETKVQG KFQGSPAIIT  120
YRVPTKAALQ EAYSTPMFPL DILAERPPQQ KFELRLVGKY GSLVSVVSFV EPLPVPGFPA  180
GCSNLEEKAA AAMAAYEYES SSCSSLDPTS MPMVYSPIVL QPQECPLSFV FDNAAAAAGD  240
NKWVPGIQGS CPCSLGSTQD MDASWGKSRK HKRSNVGLKG LEEKKARRVV LHQHDDDVKK  300
KAKEAAGGEP PAGYIHVRAR RGQATDSHSL AERVRREKIS ERMKMLQSLV PGCDKVTGKA  360
LMLDEIISYV QSLQNQVEFL SMKLASLSPL MYEFGPGIDM HPDVLRQLAK MPHEMVQCMG  420
QMGSTGISLQ GLGGGPTGFA QDGSSHMNMV VMQVGEQGQQ QGSLHQVEMS SHCFFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640733.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640734.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640735.10.0transcription factor bHLH63 isoform X1
TrEMBLA0A0E0H8A20.0A0A0E0H8A2_ORYNI; Uncharacterized protein
STRINGONIVA05G00200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-47bHLH family protein