PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G29260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 122aa MW: 13162 Da PI: 8.5087 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 100.2 | 1.5e-31 | 22 | 112 | 19 | 99 |
NF-YC 19 helPlarikkilka...dedv.......kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k d v +mis eaPv++skacelfi elt r+w + e krrt++k d+aaav++td fdflvd+v d ONIVA04G29260.1 22 HALPLARIKKIMKRsagDSSVvdggggaRMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVMAD 112 89***********7333343334444448**********************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.37E-25 | 18 | 105 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-31 | 19 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.9E-16 | 24 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGDS SVVDGGGGAR MISGEAPVVF 60 SKACELFIAE LTRRAWAATL EGKRRTVHKE DVAAAVQNTD LFDFLVDVVM ADGHDDDHTD 120 YK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-31 | 22 | 109 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732345 | 0.0 | AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653894.1 | 1e-73 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 7e-30 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9ZVL3 | 1e-29 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A0E0H7W7 | 5e-84 | A0A0E0H7W7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XZ38 | 5e-84 | A2XZ38_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q259Q7 | 5e-84 | Q259Q7_ORYSA; H0306F12.4 protein | ||||
STRING | ONIVA04G29260.1 | 8e-85 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 8e-31 | nuclear factor Y, subunit C2 |