PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G28560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 335aa MW: 36922.6 Da PI: 5.1066 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 74.9 | 1.1e-23 | 31 | 129 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 +++fw ie+++ ++ lP++r+k+i+ a e m+sa++P++++k celf+ el lr+w+ a++ +r+ + +dia+a+t t+ + fl ONIVA04G28560.1 31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFL 124 78899876122555555566779*********************************************************************** PP NF-YC 93 vdivp 97 ++v ONIVA04G28560.1 125 ANVVH 129 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 5.0E-9 | 53 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.67E-16 | 53 | 129 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.5E-19 | 53 | 128 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN 60 IIHAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES 120 YHFLANVVHG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP 180 PIGQSGTQHT TSTHVLMMQG ESIHKASKEK SPLKEVMVPT NKVGMTNSSY AVPNGGGATS 240 SKVVIDSPKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI 300 SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097278 | 0.0 | AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence. | |||
GenBank | AK288961 | 0.0 | AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613386.1 | 0.0 | uncharacterized protein LOC4348238 | ||||
TrEMBL | A0A0E0H7N6 | 0.0 | A0A0E0H7N6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G28560.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13968 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-18 | nuclear factor Y, subunit C2 |