PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G27670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 842aa MW: 93491 Da PI: 5.9778 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.2e-22 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ ONIVA04G27670.1 161 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 250 99***********************9*****86555544..8************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ ONIVA04G27670.1 251 EKNQLLLGIRRA 262 99999****997 PP | |||||||
2 | Auxin_resp | 112.6 | 3.8e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k ONIVA04G27670.1 287 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 370 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.11E-48 | 146 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-41 | 153 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.65E-21 | 160 | 261 | No hit | No description |
SMART | SM01019 | 1.4E-23 | 161 | 263 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-21 | 161 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 287 | 370 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-7 | 736 | 827 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.96E-7 | 739 | 818 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 743 | 827 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH 60 ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA 120 DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR 180 RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV 240 AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF 300 YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR 360 WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD 420 DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG 480 GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ 540 LQQLQQMQQV QNDQKQKIQP DQSYQVPTSA VLPSPTSLPS HLREKFGFSD PNANSSSFIT 600 SSSSDNMLDS SFLQGSSKAV DLSRFNQPVA SEQQQQQAWK QKFMGSQSVS FGGSVLHNSP 660 TSKDGSVENK IGRDVQNQSL FSPQVDSSSL LYNMVPNLTS NVSDGNLSTI PSGSTYLQNA 720 MYGCLDDSSG LLQNTGENDP ATRTFVKVYK SGSVGRSLDI TRFSNYAELR EELGQMFGIK 780 GQLDDPDRSG WQLVFVDREN DVLLLGDDPW ESFVNSVWYI KILSPEDVHK MGKQGNDPRY 840 LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 50 | 391 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071455 | 0.0 | AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636872.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A0E0H799 | 0.0 | A0A0E0H799_ORYNI; Auxin response factor | ||||
STRING | ONIVA04G27670.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |