PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 842aa    MW: 93491 Da    PI: 5.9778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22161262199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  ONIVA04G27670.1 161 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 250
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  ONIVA04G27670.1 251 EKNQLLLGIRRA 262
                      99999****997 PP

2Auxin_resp112.63.8e-37287370183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  ONIVA04G27670.1 287 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 370
                      79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-48146290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-41153276IPR015300DNA-binding pseudobarrel domain
CDDcd100175.65E-21160261No hitNo description
SMARTSM010191.4E-23161263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224161263IPR003340B3 DNA binding domain
PfamPF023627.9E-21161262IPR003340B3 DNA binding domain
PfamPF065071.6E-32287370IPR010525Auxin response factor
PfamPF023091.6E-7736827IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-7739818No hitNo description
PROSITE profilePS5174524.037743827IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH  60
ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA  120
DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR  180
RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV  240
AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF  300
YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR  360
WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD  420
DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG  480
GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ  540
LQQLQQMQQV QNDQKQKIQP DQSYQVPTSA VLPSPTSLPS HLREKFGFSD PNANSSSFIT  600
SSSSDNMLDS SFLQGSSKAV DLSRFNQPVA SEQQQQQAWK QKFMGSQSVS FGGSVLHNSP  660
TSKDGSVENK IGRDVQNQSL FSPQVDSSSL LYNMVPNLTS NVSDGNLSTI PSGSTYLQNA  720
MYGCLDDSSG LLQNTGENDP ATRTFVKVYK SGSVGRSLDI TRFSNYAELR EELGQMFGIK  780
GQLDDPDRSG WQLVFVDREN DVLLLGDDPW ESFVNSVWYI KILSPEDVHK MGKQGNDPRY  840
LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1615039147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714550.0AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0E0H7990.0A0A0E0H799_ORYNI; Auxin response factor
STRINGONIVA04G27670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6