PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27220.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 419aa    MW: 45707.5 Da    PI: 7.2425
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27220.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.8e-33236290155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  ONIVA04G27220.2 236 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 290
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.662233293IPR017930Myb domain
SuperFamilySSF466898.6E-18234290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-30235291IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-24236291IPR006447Myb domain, plants
PfamPF002497.6E-9240289IPR001005SANT/Myb domain
PfamPF143792.2E-22321367IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MNTKKIKLHD CHFGSPLCDP SPAPHLLSSA AAAGLSFHPG LVSSAAQHQQ HGAGGWLHEE  60
YYAPRSSPPS SLLAQTCVGS NATAFYAAEN LPQFDFPALG TAAAAAAKAP FRSSESELYR  120
PVDPLLLRAD HSVRTYYVRP QKRDSGERTP LPPPSQQQHQ DRIHGLFAGA PTTRLLSGEP  180
KIHSFPPQVA AKPILPAMDA PSLQNQMENQ LTRNCIGAAT PVTPTGNLAG SGAPSKTRIR  240
WTQDLHERFV DCVNQLGGAD KATPKGILKL MNSDGLTIYH IKSHLQKYRI AKYMPASSEG  300
KQLEKRATGN DMQNLDPKTG MQITEALRVQ LDVQRRLHEQ LEIQRNLQLR IEEQGKRLQK  360
MFEDQLKASR SVMEPQELDD VVAFAAGDGD DDAFDDVDVQ LLAVAGSGYD DAGFQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-23236293158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-23236293158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-23236293158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-23236293158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019510.0AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636269.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636270.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636271.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636272.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_025880593.10.0uncharacterized protein LOC4337318 isoform X1
TrEMBLA0A0D3G1C20.0A0A0D3G1C2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZS260.0A0A0D9ZS26_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H7480.0A0A0E0H748_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PFB60.0A0A0E0PFB6_ORYRU; Uncharacterized protein
STRINGOGLUM04G28560.10.0(Oryza glumipatula)
STRINGORUFI04G30350.10.0(Oryza rufipogon)
STRINGONIVA04G27220.10.0(Oryza nivara)
STRINGOBART04G28680.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.15e-67G2-like family protein