PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G27220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 438aa MW: 47707.1 Da PI: 6.9207 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 255 | 309 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+ ONIVA04G27220.1 255 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 309 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.662 | 252 | 312 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.14E-18 | 253 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-30 | 254 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-24 | 255 | 310 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-9 | 259 | 308 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-22 | 340 | 386 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MVVVVVVVVG CFAILEIDIM NTKKIKLHDC HFGSPLCDPS PAPHLLSSAA AAGLSFHPGL 60 VSSAAQHQQH GAGGWLHEEY YAPRSSPPSS LLAQTCVGSN ATAFYAAENL PQFDFPALGT 120 AAAAAAKAPF RSSESELYRP VDPLLLRADH SVRTYYVRPQ KRDSGERTPL PPPSQQQHQD 180 RIHGLFAGAP TTRLLSGEPK IHSFPPQVAA KPILPAMDAP SLQNQMENQL TRNCIGAATP 240 VTPTGNLAGS GAPSKTRIRW TQDLHERFVD CVNQLGGADK ATPKGILKLM NSDGLTIYHI 300 KSHLQKYRIA KYMPASSEGK QLEKRATGND MQNLDPKTGM QITEALRVQL DVQRRLHEQL 360 EIQRNLQLRI EEQGKRLQKM FEDQLKASRS VMEPQELDDV VAFAAGDGDD DAFDDVDVQL 420 LAVAGSGYDD AGFQSKIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-23 | 255 | 312 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-23 | 255 | 312 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-23 | 255 | 312 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-23 | 255 | 312 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-23 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101951 | 0.0 | AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636269.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636270.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636271.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636272.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_025880593.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
TrEMBL | A0A0D3G1C2 | 0.0 | A0A0D3G1C2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZS26 | 0.0 | A0A0D9ZS26_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H748 | 0.0 | A0A0E0H748_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PFB6 | 0.0 | A0A0E0PFB6_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G28560.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI04G30350.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G27220.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART04G28680.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6933 | 37 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 9e-67 | G2-like family protein |