PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G24570.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 332aa    MW: 36088.4 Da    PI: 8.4444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G24570.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.2e-49111751128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpk.....................kvkaeekewyfFskr 64 
                      lppGfrFhP+deelvv+yL +k++g        +       ++ +vd++k+ePw+Lp+                     +++ + +ewyfFs +
  ONIVA04G24570.2  11 LPPGFRFHPRDEELVVDYLYHKLSGGGgagageF---YggvAMVDVDLNKCEPWELPAyflhnliifparaagrrrradAARVGATEWYFFSLH 101
                      79**********************9997665442...144369**************6699********99999887764455888******** PP

              NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      d+kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ONIVA04G24570.2 102 DRKYATGQRTNRATRSGYWKATGKDRAIVTRrraaggeavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 175
                      ******************************977877777776677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-513208IPR003441NAC domain
PROSITE profilePS5100551.53711208IPR003441NAC domain
PfamPF023657.2E-2612175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSGGGGAG AGEFYGGVAM VDVDLNKCEP  60
WELPAYFLHN LIIFPARAAG RRRRADAARV GATEWYFFSL HDRKYATGQR TNRATRSGYW  120
KATGKDRAIV TRRRAAGGEA VAGGEVVGMR KTLVFYQGRA PRGSKTEWVM HEFRVDGHAV  180
ADHPSSSTSS SSSNLLKEDW VLCRVFYKSR TANPRPVVSG EAAVSLSGEL SLPPPPPLPV  240
APAVVDGYTG GGYYEQDSSA GCHHHHHRPP TSAALPFKDL TDFRDLLSNM VQGGGGAAAA  300
AKSEGFHLGW SEEESSGYVQ QSAMASQAWN PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-41621312170NO APICAL MERISTEM PROTEIN
1ut4_B3e-41621312170NO APICAL MERISTEM PROTEIN
1ut7_A3e-41621312170NO APICAL MERISTEM PROTEIN
1ut7_B3e-41621312170NO APICAL MERISTEM PROTEIN
4dul_A3e-41621312170NAC domain-containing protein 19
4dul_B3e-41621312170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-166NAC domain-containing protein 21/22
TrEMBLA0A0E0H6290.0A0A0E0H629_ORYNI; Uncharacterized protein
STRINGONIVA04G24570.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.15e-59NAC family protein