PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G24530.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 25411.8 Da    PI: 8.446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G24530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-1759105455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  ONIVA04G24530.1  59 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 105
                      59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-1952112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.52755104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-2158131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-1758109No hitNo description
PfamPF000106.9E-1560105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1861110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEGIIKIDAS LGLDQLAAIG SLYQFIRGGG EGKEAASQEE EQTPKLRPTP TRRSRSAEFH  60
NFSERRRRDR INEKLKALQE LLPNCTKTDK VSMLDEAIDY LKSLQLQLQM LVMGKGMAPV  120
VPPELQQYMH YITADPSQIP PIRPSEPRPF QITHATQQRQ SNVESDFLSQ MQNLHPSEPP  180
QNFLRPPKLQ LYTPEQQRRG LASSSGHNSG WITERNSSYN FLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-129transcription factor PIF1
RefseqXP_015634980.11e-129transcription factor PIF1
TrEMBLA0A0E0H6241e-163A0A0E0H624_ORYNI; Uncharacterized protein
STRINGONIVA04G24530.11e-164(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-32phytochrome interacting factor 3-like 5