PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G23220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 385aa MW: 41334.1 Da PI: 7.1 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 7.9e-25 | 116 | 160 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ ONIVA04G23220.1 116 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 160 79****************************************996 PP | |||||||
2 | QLQ | 59 | 1.4e-20 | 55 | 90 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ ONIVA04G23220.1 55 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 90 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-11 | 54 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 55 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-14 | 55 | 89 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 116 | 160 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 117 | 159 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MAMPFASLSP AADHRPSIFP FCRSSPLSAV GEEAQQHMMG ARWAAAAAAV ARPPPFTAAQ 60 YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY HHPVLGYGSY FGKKLDPEPG 120 RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPHSQPP ATAPAAAVTS 180 TAFQNHSLYP AIANGGGANG GGGGGGGGGS APGSFALGSN TQLHMDNAAS YSTVAGAGNK 240 DFRYSAYGVR PLADEHSPLI TGAMDTSIDN SWRLLPSQTS TFSVSSYPML GNLSELDQNT 300 ICSLPKVERE PLSFFGSDYV TVDSGKQENQ TLRPFFDEWP KARDSWPDLA DDNSLATFSA 360 TQLSISIPMA TSDFSTTSSR SHNDE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ546693 | 0.0 | FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634334.1 | 0.0 | growth-regulating factor 3 isoform X3 | ||||
Swissprot | Q6AWY6 | 0.0 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0E0H5I1 | 0.0 | A0A0E0H5I1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G23220.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |