PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G23220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 385aa    MW: 41334.1 Da    PI: 7.1
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G23220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.9e-25116160145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  ONIVA04G23220.1 116 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 160
                      79****************************************996 PP

2QLQ591.4e-205590237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  ONIVA04G23220.1 55 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 90
                     9*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-115490IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1875590IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-145589IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517116160IPR014977WRC domain
PfamPF088793.9E-21117159IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSIFP FCRSSPLSAV GEEAQQHMMG ARWAAAAAAV ARPPPFTAAQ  60
YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY HHPVLGYGSY FGKKLDPEPG  120
RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPHSQPP ATAPAAAVTS  180
TAFQNHSLYP AIANGGGANG GGGGGGGGGS APGSFALGSN TQLHMDNAAS YSTVAGAGNK  240
DFRYSAYGVR PLADEHSPLI TGAMDTSIDN SWRLLPSQTS TFSVSSYPML GNLSELDQNT  300
ICSLPKVERE PLSFFGSDYV TVDSGKQENQ TLRPFFDEWP KARDSWPDLA DDNSLATFSA  360
TQLSISIPMA TSDFSTTSSR SHNDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5466930.0FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634334.10.0growth-regulating factor 3 isoform X3
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A0E0H5I10.0A0A0E0H5I1_ORYNI; Uncharacterized protein
STRINGONIVA04G23220.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5