PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G23170.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 224aa MW: 24878.2 Da PI: 7.5025 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 30 | 1.1e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m++kgLtl+h+kSHLQkYRl ONIVA04G23170.2 1 MGMKGLTLYHLKSHLQKYRL 20 899****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 1 | 22 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.2E-21 | 67 | 111 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MGMKGLTLYH LKSHLQKYRL GRQSKKSAGL ELAVADSGEF TAEGISFSIG APPRNPAGGN 60 NTGEIPLADA LKYQVEVQRK LQEQLEVQKK LQMRIEAQGR YLKEILEKAQ KNISLDANGS 120 ANLSSTRSQI TDINLALSGF MDNATQVQEE NNELMKPISD DNLKVNNLGF QLYHLGSQES 180 KDVKCTPKTE ELLLLDLNIQ GGYELSSRGM QGCELDLKIN QQRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK106400 | 0.0 | AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635409.1 | 1e-162 | myb family transcription factor PHL11 isoform X2 | ||||
TrEMBL | A0A0E0H5H4 | 1e-162 | A0A0E0H5H4_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8ATM6 | 1e-161 | B8ATM6_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G25750.1 | 1e-161 | (Oryza rufipogon) | ||||
STRING | ONIVA04G23170.1 | 1e-161 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 3e-25 | G2-like family protein |