PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G23170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 279aa    MW: 30800 Da    PI: 8.7589
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G23170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.4e-342175155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  ONIVA04G23170.1 21 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 75
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5021878IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-331877IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-242176IPR006447Myb domain, plants
SuperFamilySSF466891.74E-162177IPR009057Homeodomain-like
PfamPF002492.8E-92374IPR001005SANT/Myb domain
PfamPF143791.8E-21122166IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MFEGCYGGVG SAAAAATRDP KPRLRWTPDL HERFVDAVTR LGGPDKATPK SVLRLMGMKG  60
LTLYHLKSHL QKYRLGRQSK KSAGLELAVA DSGEFTAEGI SFSIGAPPRN PAGGNNTGEI  120
PLADALKYQV EVQRKLQEQL EVQKKLQMRI EAQGRYLKEI LEKAQKNISL DANGSANLSS  180
TRSQITDINL ALSGFMDNAT QVQEENNELM KPISDDNLKV NNLGFQLYHL GSQESKDVKC  240
TPKTEELLLL DLNIQGGYEL SSRGMQGCEL DLKINQQRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064000.0AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.10.0myb family transcription factor PHL11 isoform X2
TrEMBLA0A0E0H5H30.0A0A0E0H5H3_ORYNI; Uncharacterized protein
STRINGONIVA04G23170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-53G2-like family protein