PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G22720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 38065.3 Da PI: 7.2046 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.5e-13 | 93 | 144 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+ ONIVA04G22720.1 93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-18 | 91 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.15E-14 | 91 | 148 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 91 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.237 | 92 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 93 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 98 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP 60 EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP 120 ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS 180 AADQETPAAA AADGPPFARF FTYPQYVWCH NPAQDGGGGG GAAAENRAGV ADIEVSLVET 240 HASIRVMAAR RPGQLLKMVA GLQALRLTVL HLNVTALGSL ALYSISVKRF HGGKAIASLG 300 PLGVFFLYAL YLWYSTTVVE EGCGMATVDD IAAAVHHVLC IIDAEAASQM LLAGEASG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 79 | RRKRRRR |
2 | 74 | 78 | RKRRR |
3 | 74 | 81 | RKRRRRAR |
4 | 93 | 104 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637096.1 | 1e-179 | transcription factor bHLH94 | ||||
TrEMBL | A0A0E0H5C1 | 0.0 | A0A0E0H5C1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G22720.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22490.1 | 7e-47 | bHLH family protein |