PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19860.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 443aa MW: 48983.4 Da PI: 4.7906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	369	415	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L ONIVA04G19860.1 369 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 415 5899*********************7.....6*************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.1E-47	20	193	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.063	366	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-15	369	420	No hit	No description
SuperFamily	SSF47459	3.4E-17	369	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	370	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	370	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-14	372	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK 60 TRKISNLEDH TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV 120 CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT 180 DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE 240 DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAANDV 300 DGVAYSHASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS NIDDRGSVAI 360 TTTPGSNIKS HVMSERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT YLKVLEKRVK 420 ELESSSREPS RWRPTEIGQG KAP

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDH TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE  240
DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAANDV  300
DGVAYSHASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS NIDDRGSVAI  360
TTTPGSNIKS HVMSERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT YLKVLEKRVK  420
ELESSSREPS RWRPTEIGQG KAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5t0f_A	2e-20	5	193	2	188	Transcription factor MYC3
5t0q_A	2e-20	5	193	2	188	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	374	379	ERRRRE
2	375	380	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB021080	0.0	AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635094.1	0.0	anthocyanin regulatory R-S protein
Swissprot	P13526	1e-128	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0E0H463	0.0	A0A0E0H463_ORYNI; Uncharacterized protein
TrEMBL	B8ASW4	0.0	B8ASW4_ORYSI; Uncharacterized protein
STRING	ONIVA04G19860.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-67	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]