PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 548aa    MW: 59858 Da    PI: 5.0261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13372418354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++h + ErrRR+++N+ f  L++++P+        K++Ka+iLe+++ Y+k L
  ONIVA04G19650.1 372 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 418
                      57999**********************66......***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4621197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.834369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-17372440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.73E-15372423No hitNo description
PfamPF000101.6E-10373418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-16373438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SLLAAAVRSI SWSYAIFWSI SNSCPGVLTW NDGFYNGVVK  60
TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT  180
DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM  240
VVSDECVSNA NRDPITMEID ELYSIYEDLD LDTVRFLEDN GWPVNPSSFQ LVSASSTEAV  300
AAAAAANDVD GVANSQVSCF MAWKSAKSNE MAVPVVTGIE SQKLLKKVVD CGARMSTGRG  360
SRAALTQESG IKNHVISERR RREKLNEMFL ILKSIVPSIH KVDKASILEE TIAYLKVLEK  420
RVKELESSSE RSHQRATETG QQRRCEITGK ELVSEIGVSG GGDAGREHHH VNVTVTDKVV  480
LLEVQCRWKE LVMTRVFDAI KSLCLDVLSV QASAPDGLLG LKIQAKFACS GSVAPGMISE  540
ALQKAIGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1851972192Transcription factor MYC3
4rqw_B2e-1851972192Transcription factor MYC3
4rs9_A2e-1851972192Transcription factor MYC3
4yz6_A2e-1851972192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRE
2378383RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117040.0AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP130271e-170ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A0E0H4390.0A0A0E0H439_ORYNI; Uncharacterized protein
STRINGONIVA04G19650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.17e-80bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]