PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G18420.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 436aa    MW: 46094.8 Da    PI: 8.1676
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G18420.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19351385135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  ONIVA04G18420.2 351 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 385
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018345381IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18345399IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-14348408No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15349383IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.02E-15350407No hitNo description
PROSITE patternPS003440351376IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17351385IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLDGK  60
MDALKSSCRS EEAADEGAAA APSAWGMVER DGFSVEDLLD LEEFCEAEKD AAEENEQALA  120
VVAAPEEEKS KDDSQPSSVV TYELVAPPPP PPEIVDLPAH DVEELEWVSR IMDDSLSELP  180
PPPQPPASVV ASLAARPPQP RQLQRRPQDG AYRALPPASY PVRTPTICAL STEALVPVKA  240
KRSKRSRATA WSLSGAPPFS DSTSSSSTTT TSSCSSSASF SSFSPLLKFE WHPLGGTSDL  300
PDDHLLPPGK KSKHGKNGKN KPKKRGRKPK QLPPHPSGAA ASAPAPGDRR CSHCGVQKTP  360
QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFVSA IHSNSHRKVL EMRRKKEVGS  420
GLLTAAAAAA PAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605740.0AK060574.1 Oryza sativa Japonica Group cDNA clone:001-023-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636682.10.0GATA transcription factor 6
TrEMBLA0A0E0H3N80.0A0A0E0H3N8_ORYNI; Uncharacterized protein
STRINGOS04T0539500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5