PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G16580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 392aa    MW: 43694 Da    PI: 8.3116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G16580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-09631794126
              NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      G  F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++    g  ++ra   g  + + + k   + 
  ONIVA04G16580.1  63 GQPFDPTAEDIVNRYLPLRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRRA-GPGDYRLSQEAK---H- 148
                      667************977766666556567**************83333344457******998854.33..2333.445555444322...2. PP

              NAM  96 kgelvglkktLvfykgrapkg..ektdWvmhey 126
                        +     +++ +y+ ++  g  ++t+W m ey
  ONIVA04G16580.1 149 --RGNAFCHSFRYYEYEDAGGgfRETEWRMVEY 179
                      ..2235667888886655544235899999988 PP
2NAM24.95.6e-0823435713128
              NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk......rknratksgyWkatgkdkevlskkge 98 
                       lv+ yL+    g++l + +v +  d+++++P  + +++ a +++ ew+f + r + +a+g+      r+++ +  g      + + v   ++ 
  ONIVA04G16580.1 234 VLVQLYLASLRLGNPLAC-RVHRADDVFDAHPAVITAALPAaNDRcEWFFAAVRPRGHAQGHgdgappRPRK-AGPGAYVPVRECRVVDG-RRG 324
                      58999****999999998.666667*********98533331444699999999999998777777645544.57799998888776666.888 PP

              NAM  99 lvglkktLvfy...kgrapkgektdWvmheyrl 128
                      ++g++ ++ +    ++ ++ +++t+W m+eyr+
  ONIVA04G16580.1 325 DMGCRLVFWYReddEEARRASRRTEWWMDEYRF 357
                      9***9999888554344555679********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-2355202IPR003441NAC domain
PROSITE profilePS5100516.39260204IPR003441NAC domain
PfamPF023654.1E-764179IPR003441NAC domain
PROSITE profilePS5100513.457222386IPR003441NAC domain
SuperFamilySSF1019416.67E-22233384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRPRASQAAA PETAAAAESL REEETEDGWV FLAGRSRATR PPPPPPSPMA RVVASGSSGG  60
GGGQPFDPTA EDIVNRYLPL RRALRCDALP RQVHDADVYG AHPALLASVY PAANERFEWF  120
FFVCRRRCPG GRRRAGPGDY RLSQEAKHRG NAFCHSFRYY EYEDAGGGFR ETEWRMVEYG  180
DRGRDAGAGG SEGFELVVCK VYPARGGALH ERLGADRAVL ATRHRADEDA KPQVLVQLYL  240
ASLRLGNPLA CRVHRADDVF DAHPAVITAA LPAANDRCEW FFAAVRPRGH AQGHGDGAPP  300
RPRKAGPGAY VPVRECRVVD GRRGDMGCRL VFWYREDDEE ARRASRRTEW WMDEYRFGPD  360
FPYGELPAPM ARGEDEELVV YKVYPRLVGN RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629690.0AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552130.0CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634867.10.0uncharacterized protein LOC9267434
TrEMBLA0A0E0H2Z80.0A0A0E0H2Z8_ORYNI; Uncharacterized protein
STRINGONIVA04G16580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819