PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G15770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 331aa MW: 34418.1 Da PI: 4.9324 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 8.1e-08 | 20 | 56 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++lfC+ + +lC+ C H g H ONIVA04G15770.1 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56 68*************************9999.545556 PP | |||||||
2 | zf-B_box | 22.9 | 1.7e-07 | 59 | 103 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p ONIVA04G15770.1 59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103 679*****************************6688888898877 PP | |||||||
3 | CCT | 67.7 | 3.1e-23 | 239 | 282 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ ONIVA04G15770.1 239 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 282 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.5E-9 | 17 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 17 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.7E-6 | 20 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-9 | 20 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.424 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.9E-6 | 59 | 104 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-9 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.4E-18 | 239 | 281 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.876 | 239 | 281 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW 60 LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPKPGSG 120 AHGGDAAAAD DDGSNDAEAA SWLLPEPDHG QKDGAVGATD ELYADSDPYL DLDFARSMDD 180 IKAIGVQNGP PELDITGGKL FYSDHSMNHS VSSSEAAVVP DAAAGGGAPM PVVSRGRERE 240 ARLMRYREKR KSRRFEKTIR YASRKAYAET RPRIKGRFAK RTKGGAGADA DADADGEDEE 300 MYSSAAAAVA ALMAPGGSDA DYGVDGVVPT F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121024 | 0.0 | AK121024.1 Oryza sativa Japonica Group cDNA clone:J023049O11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633841.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0E0H2P8 | 0.0 | A0A0E0H2P8_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q01IC4 | 0.0 | Q01IC4_ORYSA; OSIGBa0092E01.11 protein | ||||
STRING | ONIVA04G15770.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 4e-48 | CONSTANS-like 3 |