PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G15000.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 31686.3 Da    PI: 9.5256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G15000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12219264655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  ONIVA04G15000.2 219 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 264
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-16216279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-12217268No hitNo description
Gene3DG3DSA:4.10.280.105.2E-14218278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9219264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRAPDDDDRG IIHSGFILTR WLPGWGEWKS VARGAKAINS LTYLSIAVRS IVNGFSSSAR  60
PAGSSLGEVR HGAMSSSSSN NKKMKAPLSF ASSRQGSGGL SQISEDGIPD LTDSIHGAAH  120
HHGRSEENVS THDHVVRSFS SGGFSIGSWE DSNSIVFSTS TGKSGAHGND DIIATLSNYE  180
SQLVAPREMA GVEKYLQMQH DQVPFRVRAK RGCATHPRSI AERERRTRIS EKLRKLQALV  240
PNMDKQTSTS DMLDLAVDHI KGLQSQLQTL KEDKEKCTCS CKQASRNRPA D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.11e-173transcription factor bHLH129
TrEMBLA0A0E0H2F80.0A0A0E0H2F8_ORYNI; Uncharacterized protein
STRINGONIVA04G15000.11e-173(Oryza nivara)
STRINGOBART04G16900.11e-173(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-45bHLH family protein